<?xml version="1.0" encoding="UTF-8"?>
<rss version="2.0"
	xmlns:content="http://purl.org/rss/1.0/modules/content/"
	xmlns:wfw="http://wellformedweb.org/CommentAPI/"
	xmlns:dc="http://purl.org/dc/elements/1.1/"
	xmlns:atom="http://www.w3.org/2005/Atom"
	xmlns:sy="http://purl.org/rss/1.0/modules/syndication/"
	xmlns:slash="http://purl.org/rss/1.0/modules/slash/"
	>

<channel>
	<title>scientifik info</title>
	<atom:link href="http://www.scientifik.info/web/feed/" rel="self" type="application/rss+xml" />
	<link>http://www.scientifik.info/web</link>
	<description>management and analyisis of scientific information</description>
	<lastBuildDate>Fri, 16 Dec 2011 11:07:32 +0000</lastBuildDate>
	<language>en</language>
	<sy:updatePeriod>hourly</sy:updatePeriod>
	<sy:updateFrequency>1</sy:updateFrequency>
	<generator>http://wordpress.org/?v=3.3.1</generator>
		<item>
		<title>Resources for Climate Change, Agriculture and Food Security research</title>
		<link>http://www.scientifik.info/web/2011/12/resources-for-climate-change-agriculture-and-food-security-research/</link>
		<comments>http://www.scientifik.info/web/2011/12/resources-for-climate-change-agriculture-and-food-security-research/#comments</comments>
		<pubDate>Fri, 16 Dec 2011 11:05:41 +0000</pubDate>
		<dc:creator>admin</dc:creator>
				<category><![CDATA[CCAFS]]></category>
		<category><![CDATA[Featured]]></category>

		<guid isPermaLink="false">http://www.scientifik.info/web/?p=156</guid>
		<description><![CDATA[]]></description>
			<content:encoded><![CDATA[]]></content:encoded>
			<wfw:commentRss>http://www.scientifik.info/web/2011/12/resources-for-climate-change-agriculture-and-food-security-research/feed/</wfw:commentRss>
		<slash:comments>0</slash:comments>
		</item>
		<item>
		<title>Environmental analysis of crop trials using weather data</title>
		<link>http://www.scientifik.info/web/2011/12/environmental-analysis-of-crop-trials-using-weather-data/</link>
		<comments>http://www.scientifik.info/web/2011/12/environmental-analysis-of-crop-trials-using-weather-data/#comments</comments>
		<pubDate>Fri, 16 Dec 2011 09:37:39 +0000</pubDate>
		<dc:creator>admin</dc:creator>
				<category><![CDATA[CCAFS]]></category>
		<category><![CDATA[data analysis]]></category>
		<category><![CDATA[mgec]]></category>

		<guid isPermaLink="false">http://www.scientifik.info/web/?p=151</guid>
		<description><![CDATA[Ste-by-step tutorial on environmental analysis of crop trials using weather data with R ]]></description>
			<content:encoded><![CDATA[<div style="width:425px" id="__ss_10607967"> <strong style="display:block;margin:12px 0 4px"><a href="http://www.slideshare.net/alabarga/analysis-crop-trials-using-climate-data" title="Analysis crop trials using climate data" target="_blank">Analysis crop trials using climate data</a></strong> <object id="__sse10607967" width="425" height="355"><param name="movie" value="http://static.slidesharecdn.com/swf/ssplayer2.swf?doc=analysiscroptrialsusingclimatedata-111215164221-phpapp02&#038;stripped_title=analysis-crop-trials-using-climate-data&#038;userName=alabarga" /><param name="allowFullScreen" value="true"/><param name="allowScriptAccess" value="always"/><param name="wmode" value="transparent"/><embed name="__sse10607967" src="http://static.slidesharecdn.com/swf/ssplayer2.swf?doc=analysiscroptrialsusingclimatedata-111215164221-phpapp02&#038;stripped_title=analysis-crop-trials-using-climate-data&#038;userName=alabarga" type="application/x-shockwave-flash" allowscriptaccess="always" allowfullscreen="true" wmode="transparent" width="425" height="355"></embed></object>
<div style="padding:5px 0 12px"> View more <a href="http://www.slideshare.net/" target="_blank">presentations</a> from <a href="http://www.slideshare.net/alabarga" target="_blank">Alberto Labarga</a> </div>
</p></div>
]]></content:encoded>
			<wfw:commentRss>http://www.scientifik.info/web/2011/12/environmental-analysis-of-crop-trials-using-weather-data/feed/</wfw:commentRss>
		<slash:comments>0</slash:comments>
		</item>
		<item>
		<title>Using Climate Scenarios and Analogues for Designing Adaptation Strategies in Agriculture</title>
		<link>http://www.scientifik.info/web/2011/12/using-climate-scenarios-and-analogues-for-designing-adaptation-strategies-in-agriculture/</link>
		<comments>http://www.scientifik.info/web/2011/12/using-climate-scenarios-and-analogues-for-designing-adaptation-strategies-in-agriculture/#comments</comments>
		<pubDate>Fri, 16 Dec 2011 09:29:14 +0000</pubDate>
		<dc:creator>admin</dc:creator>
				<category><![CDATA[CCAFS]]></category>
		<category><![CDATA[data analysis]]></category>
		<category><![CDATA[mgec]]></category>

		<guid isPermaLink="false">http://www.scientifik.info/web/?p=145</guid>
		<description><![CDATA[To help bridge the gap between climate science and agricultural science, CCAFS is holding a capacitation workshop on how to use climate scenarios, modelling, and analogue tools to build the resilience of agricultural production systems. The workshop, titled "Using Climate Scenarios and Analogues for Designing Adaptation Strategies in Agriculture" will be held on 19-23 September in Kathmandu, Nepal.]]></description>
			<content:encoded><![CDATA[<p>To help bridge the gap between climate science and agricultural science, <a href="http://www.scientifik.info/web/2011/12/climate-change-agriculture-and-food-security/">CCAFS</a> is holding a capacitation workshop on how to use climate scenarios, modelling, and analogue tools to build the resilience of agricultural production systems. The workshop, titled &#8220;<strong>Using Climate Scenarios and Analogues for Designing Adaptation Strategies in Agriculture</strong>&#8221; will be held on 19-23 September in Kathmandu, Nepal.</p>
<p>In attendance will be participants from government, research and meteorological institutes, universities, and other key partners. They will mostly come from the South Asian (Indo-Gangetic Plains) region, but West and East Africa will be represented as well. The workshop will provide overviews of and training in climate modeling techniques and tools, including downscaling, weather generators, and modules. It will feature some CCAFS-produced or -refined outputs like MarkSIM and the climate analogue tool. The focus will be on how to use these instruments in real-world applications, so case studies will also be explored.</p>
<div id="__ss_10607973" style="width: 425px;"><strong><a title="Introduction to r" href="http://www.slideshare.net/alabarga/introduction-to-r-10607973" target="_blank">Introduction to r</a></strong> <object id="__sse10607973" classid="clsid:d27cdb6e-ae6d-11cf-96b8-444553540000" width="425" height="355" codebase="http://download.macromedia.com/pub/shockwave/cabs/flash/swflash.cab#version=6,0,40,0"><param name="allowFullScreen" value="true" /><param name="allowScriptAccess" value="always" /><param name="wmode" value="transparent" /><param name="src" value="http://static.slidesharecdn.com/swf/ssplayer2.swf?doc=introductiontor-111215164231-phpapp02&amp;stripped_title=introduction-to-r-10607973&amp;userName=alabarga" /><param name="name" value="__sse10607973" /><param name="allowfullscreen" value="true" /><embed id="__sse10607973" type="application/x-shockwave-flash" width="425" height="355" src="http://static.slidesharecdn.com/swf/ssplayer2.swf?doc=introductiontor-111215164231-phpapp02&amp;stripped_title=introduction-to-r-10607973&amp;userName=alabarga" name="__sse10607973" wmode="transparent" allowscriptaccess="always" allowfullscreen="true"></embed></object></p>
<div style="padding: 5px 0 12px;">View more <a href="http://www.slideshare.net/" target="_blank">presentations</a> from <a href="http://www.slideshare.net/alabarga" target="_blank">Alberto Labarga</a></div>
</div>
<div id="__ss_10607969" style="width: 425px;"><strong><a title="Climate data in r with the raster package" href="http://www.slideshare.net/alabarga/climate-data-in-r-with-the-raster-package" target="_blank">Climate data in r with the raster package</a></strong> <object id="__sse10607969" classid="clsid:d27cdb6e-ae6d-11cf-96b8-444553540000" width="425" height="355" codebase="http://download.macromedia.com/pub/shockwave/cabs/flash/swflash.cab#version=6,0,40,0"><param name="allowFullScreen" value="true" /><param name="allowScriptAccess" value="always" /><param name="wmode" value="transparent" /><param name="src" value="http://static.slidesharecdn.com/swf/ssplayer2.swf?doc=climatedatainrwiththerasterpackage-111215164222-phpapp01&amp;stripped_title=climate-data-in-r-with-the-raster-package&amp;userName=alabarga" /><param name="name" value="__sse10607969" /><param name="allowfullscreen" value="true" /><embed id="__sse10607969" type="application/x-shockwave-flash" width="425" height="355" src="http://static.slidesharecdn.com/swf/ssplayer2.swf?doc=climatedatainrwiththerasterpackage-111215164222-phpapp01&amp;stripped_title=climate-data-in-r-with-the-raster-package&amp;userName=alabarga" name="__sse10607969" wmode="transparent" allowscriptaccess="always" allowfullscreen="true"></embed></object></p>
<div style="padding: 5px 0 12px;">View more <a href="http://www.slideshare.net/" target="_blank">presentations</a> from <a href="http://www.slideshare.net/alabarga" target="_blank">Alberto Labarga</a></div>
</div>
<div id="__ss_10607975" style="width: 425px;"><strong><a title="Genotype by environment interactions gx e and climate change" href="http://www.slideshare.net/alabarga/genotype-by-environment-interactions-gx-e-and-climate-change" target="_blank">Genotype by environment interactions gx e and climate change</a></strong> <object id="__sse10607975" classid="clsid:d27cdb6e-ae6d-11cf-96b8-444553540000" width="425" height="355" codebase="http://download.macromedia.com/pub/shockwave/cabs/flash/swflash.cab#version=6,0,40,0"><param name="allowFullScreen" value="true" /><param name="allowScriptAccess" value="always" /><param name="wmode" value="transparent" /><param name="src" value="http://static.slidesharecdn.com/swf/ssplayer2.swf?doc=genotypebyenvironmentinteractionsgxeandclimatechange-111215164237-phpapp02&amp;stripped_title=genotype-by-environment-interactions-gx-e-and-climate-change&amp;userName=alabarga" /><param name="name" value="__sse10607975" /><param name="allowfullscreen" value="true" /><embed id="__sse10607975" type="application/x-shockwave-flash" width="425" height="355" src="http://static.slidesharecdn.com/swf/ssplayer2.swf?doc=genotypebyenvironmentinteractionsgxeandclimatechange-111215164237-phpapp02&amp;stripped_title=genotype-by-environment-interactions-gx-e-and-climate-change&amp;userName=alabarga" name="__sse10607975" wmode="transparent" allowscriptaccess="always" allowfullscreen="true"></embed></object></p>
<div style="padding: 5px 0 12px;">View more <a href="http://www.slideshare.net/" target="_blank">presentations</a> from <a href="http://www.slideshare.net/alabarga" target="_blank">Alberto Labarga</a></div>
</div>
<div id="__ss_10607967" style="width: 425px;"><strong><a title="Analysis crop trials using climate data" href="http://www.slideshare.net/alabarga/analysis-crop-trials-using-climate-data" target="_blank">Analysis crop trials using climate data</a></strong> <object id="__sse10607967" classid="clsid:d27cdb6e-ae6d-11cf-96b8-444553540000" width="425" height="355" codebase="http://download.macromedia.com/pub/shockwave/cabs/flash/swflash.cab#version=6,0,40,0"><param name="allowFullScreen" value="true" /><param name="allowScriptAccess" value="always" /><param name="wmode" value="transparent" /><param name="src" value="http://static.slidesharecdn.com/swf/ssplayer2.swf?doc=analysiscroptrialsusingclimatedata-111215164221-phpapp02&amp;stripped_title=analysis-crop-trials-using-climate-data&amp;userName=alabarga" /><param name="name" value="__sse10607967" /><param name="allowfullscreen" value="true" /><embed id="__sse10607967" type="application/x-shockwave-flash" width="425" height="355" src="http://static.slidesharecdn.com/swf/ssplayer2.swf?doc=analysiscroptrialsusingclimatedata-111215164221-phpapp02&amp;stripped_title=analysis-crop-trials-using-climate-data&amp;userName=alabarga" name="__sse10607967" wmode="transparent" allowscriptaccess="always" allowfullscreen="true"></embed></object></p>
<div style="padding: 5px 0 12px;">View more <a href="http://www.slideshare.net/" target="_blank">presentations</a> from <a href="http://www.slideshare.net/alabarga" target="_blank">Alberto Labarga</a></div>
</div>
]]></content:encoded>
			<wfw:commentRss>http://www.scientifik.info/web/2011/12/using-climate-scenarios-and-analogues-for-designing-adaptation-strategies-in-agriculture/feed/</wfw:commentRss>
		<slash:comments>0</slash:comments>
		</item>
		<item>
		<title>Climate Change, Agriculture and Food Security</title>
		<link>http://www.scientifik.info/web/2011/12/climate-change-agriculture-and-food-security/</link>
		<comments>http://www.scientifik.info/web/2011/12/climate-change-agriculture-and-food-security/#comments</comments>
		<pubDate>Fri, 16 Dec 2011 09:25:31 +0000</pubDate>
		<dc:creator>admin</dc:creator>
				<category><![CDATA[CCAFS]]></category>
		<category><![CDATA[data analysis]]></category>
		<category><![CDATA[Featured]]></category>
		<category><![CDATA[mgec]]></category>

		<guid isPermaLink="false">http://www.scientifik.info/web/?p=143</guid>
		<description><![CDATA[The Consultative Group on International Agricultural Research (CGIAR) Research Program on Climate Change, Agriculture and Food Security (CCAFS)  is investing in a large multi‐purpose repository of multi‐site agricultural trial information, and now looks to develop methods for analyzing this data to understand varietal response through genotype by environment  (GxE)  analyses.  The  methods  developed  under  this  project  will  then  be  used  for 
training developing  country scientists and to  develop a community of data analysts looking at varietal 
response for a whole range of crops. 
]]></description>
			<content:encoded><![CDATA[<p>The <span style="font-family: Arial, Helvetica, sans-serif; line-height: normal;"><a title="Consultative Group on International Agricultural Research" href="http://www.cgiar.org" target="_blank">Consultative Group on International Agricultural Research</a> (</span><a title="Consultative Group on International Agricultural Research" href="http://www.cgiar.org/" target="_blank">CGIAR</a>) Research Program on <strong>Climate Change, Agriculture and Food Security</strong> (CCAFS) is a strategic ten‐year  partnership  emerging  from  a  new  collaboration  between  the  Consultative  Group  on International  Agricultural  Research  (CGIAR)  and  the  Earth  System  Science  Partnership  (ESSP).  Throug this  union,  CCAFS  brings  together  strategic  research  in  agricultural  science,  development  research, climate  science,  and  Earth  System  science,  to  overcome  the  threats  that  a  changing  climate  poses  to food  security,  rural  livelihoods  and  the  environment.</p>
<div>This  task  will  be  carried  out  through  adaptive research  structured  around  three  “placed‐based”  Themes  (Adaptation  to  progressive  climate  change, Adaptation  though  risk  management,  and  Pro‐poor  mitigation)  and  a  fourth  cross‐cutting  Theme (Integration  for  Decision  Making)  in  three  focus  regions:  Indo‐Gangetic  Plains,  West  Africa,  and  East Africa.  CCAFS  will  bring  together  the  collective  expertise  and  capacity  of  all  CGIAR  centers  and  other CGIAR  Research  Programs.  It  will  also  involve  farmers,  policy  makers,  donors  and  other  stakeholders, integrating their knowledge and needs into the tools and approaches that CCAFS develops.</div>
<div>
<div>The  first  objective  of  the  ‘<strong>Adaptation  to  progressive  climate  change</strong>’  Theme  is  to  achieve  adapted  farming  systems  for  changing  climate  conditions  in  space  and  time.  This  task  will  require  the  <strong>development of new technologies and testing across a range of pilot sites</strong>, as well as modeling activities  to  out  scale  the  potential  of  individual  adaptation  options  across  a  wide  range  of  geographies.</div>
<div>Understanding  varietal  response  to  different  environments  is  a  key  step  towards  understanding  the  limitations of current production systems to future climate conditions, and will permit the targeting of  suitable varieties to enable adaptation.</div>
</div>
<div>
<div id="_mcePaste">CCAFS is investing in a large multi‐purpose repository of multi‐site agricultural trial information, and now looks to develop methods for analyzing this data to understand varietal response through <a href="http://en.wikipedia.org/wiki/Gene%E2%80%93environment_interaction" target="_blank">genotype by environment  (GxE)  analyses</a>.  The  methods  developed  by <a title="Linkatu : Semantic techonologies" href="http://www.linkatu.net" target="_blank">Linkatu</a> in the context of this project will  then  be  used  for training developing  country scientists and to  develop a community of data analysts looking at varietal response for a whole range of crops.</div>
</div>
<div>The expected outputs of this project are:</div>
<div>
<div>
<ul>
<li><a title="Analyzing the impact of climate change on crops and varieties" href="https://r-forge.r-project.org/projects/cropcc/" target="_self">A  generic  method  fully  coded  in  R  and  documented</a>.  The  code  must  be  integrated  into  an  R‐package (library).</li>
<li>Application of the method to one case study, using the data at <a href="http://www.agtrials.org " target="_blank">www.agtrials.org </a></li>
<li><a title="Environmental analysis of crop trials using weather data" href="http://www.scientifik.info/web/2011/12/environmental-analysis-of-crop-trials-using-weather-data/" target="_blank">A tutorial</a> with the selected case study</li>
<li><a title="Using  Climate  Scenarios and Analogues for Designing Adaptation Strategies in Agriculture" href="http://www.scientifik.info/web/2011/12/using-climate-scenarios-and-analogues-for-designing-adaptation-strategies-in-agriculture/" target="_blank">Training  course</a> to  be  provided  in  the  frame  of  the  CCAFS  workshop  ‘<a title="Using  Climate  Scenarios and Analogues for Designing Adaptation Strategies in Agriculture" href="http://www.scientifik.info/web/2011/12/using-climate-scenarios-and-analogues-for-designing-adaptation-strategies-in-agriculture/">Using  Climate  Scenarios and Analogues for Designing Adaptation Strategies in Agriculture</a>’ to be held in Nepal during the  week  of  the  19  September  2011.</li>
</ul>
<div>Additionally,</div>
<div>
<ul>
<li>a web page with <a href="http://www.scientifik.info/web/2011/12/resources-for-climate-change-agriculture-and-food-security-research/" target="_blank">literature, data and software resources for climate change and agriculture research</a> has been created</li>
</ul>
</div>
<ul></ul>
</div>
</div>
]]></content:encoded>
			<wfw:commentRss>http://www.scientifik.info/web/2011/12/climate-change-agriculture-and-food-security/feed/</wfw:commentRss>
		<slash:comments>0</slash:comments>
		</item>
		<item>
		<title>Curso de Análisis de Metagenomas y Genómica Comparada empleando supercomputación</title>
		<link>http://www.scientifik.info/web/2011/10/curso-de-analisis-de-metagenomas-y-genomica-comparada-empleando-supercomputacion/</link>
		<comments>http://www.scientifik.info/web/2011/10/curso-de-analisis-de-metagenomas-y-genomica-comparada-empleando-supercomputacion/#comments</comments>
		<pubDate>Wed, 19 Oct 2011 06:45:55 +0000</pubDate>
		<dc:creator>admin</dc:creator>
				<category><![CDATA[bioinformatics]]></category>
		<category><![CDATA[ngs]]></category>

		<guid isPermaLink="false">http://www.scientifik.info/web/?p=128</guid>
		<description><![CDATA[Introduction to linux for bioinformatics
View more presentations from Alberto Labarga
Bibliografía recomendada

Linux for Dummies http://ow.ly/d/nb3
Bioinformatics Programming Using Python http://ow.ly/d/nb4 
Python course in Bioinformatic http://ow.ly/d/nb5



]]></description>
			<content:encoded><![CDATA[<div id="__ss_8289632" style="width: 425px;"><strong><a title="Introduction to linux for bioinformatics" href="http://www.slideshare.net/alabarga/introduction-to-linux-for-bioinformatics" target="_blank">Introduction to linux for bioinformatics</a></strong></p>
<div style="padding: 5px 0 12px;">View more <a href="http://www.slideshare.net/" target="_blank">presentations</a> from <a href="http://www.slideshare.net/alabarga" target="_blank">Alberto Labarga</a></div>
<div style="padding: 5px 0 12px;"><strong>Bibliografía recomendada</strong></div>
<div style="padding: 5px 0 12px;">
<div id="_mcePaste">Linux for Dummies <a title="Linux for Dummies" href="http://ow.ly/d/nb3" target="_blank">http://ow.ly/d/nb3</a></div>
<div id="_mcePaste">Bioinformatics Programming Using Python <a href="http://ow.ly/d/nb4 " target="_blank">http://ow.ly/d/nb4 </a></div>
<div id="_mcePaste">Python course in Bioinformatic <a href="http://ow.ly/d/nb5" target="_blank">http://ow.ly/d/nb5</a></div>
</div>
<div style="padding: 5px 0 12px;"></div>
</div>
]]></content:encoded>
			<wfw:commentRss>http://www.scientifik.info/web/2011/10/curso-de-analisis-de-metagenomas-y-genomica-comparada-empleando-supercomputacion/feed/</wfw:commentRss>
		<slash:comments>0</slash:comments>
		</item>
		<item>
		<title>Transcriptómica y Modelización de Proteínas empleando supercomputación</title>
		<link>http://www.scientifik.info/web/2011/10/transcriptomica-y-modelizacion-de-proteinas-empleando-supercomputacion/</link>
		<comments>http://www.scientifik.info/web/2011/10/transcriptomica-y-modelizacion-de-proteinas-empleando-supercomputacion/#comments</comments>
		<pubDate>Wed, 19 Oct 2011 06:45:32 +0000</pubDate>
		<dc:creator>admin</dc:creator>
				<category><![CDATA[bioinformatics]]></category>
		<category><![CDATA[ngs]]></category>

		<guid isPermaLink="false">http://www.scientifik.info/web/?p=126</guid>
		<description><![CDATA[Introduction to linux for bioinformatics 
View more presentations from Alberto Labarga

Bibliografía

Linux for dummies http://ow.ly/d/nb3 
Bioinformatics Programming Using Python http://ow.ly/d/nb4
Python course in Bioinformatic http://ow.ly/d/nb5
Beginning Perl for bioinformatics http://ow.ly/73Nvc
Mastering Perl for bioinformatics http://ow.ly/73NBH

]]></description>
			<content:encoded><![CDATA[<div id="__ss_8289632" style="width: 425px;"><strong><a title="Introduction to linux for bioinformatics" href="http://www.slideshare.net/alabarga/introduction-to-linux-for-bioinformatics" target="_blank">Introduction to linux for bioinformatics</a></strong> <object id="__sse8289632" classid="clsid:d27cdb6e-ae6d-11cf-96b8-444553540000" width="425" height="355" codebase="http://download.macromedia.com/pub/shockwave/cabs/flash/swflash.cab#version=6,0,40,0"><param name="allowFullScreen" value="true" /><param name="allowScriptAccess" value="always" /><param name="src" value="http://static.slidesharecdn.com/swf/ssplayer2.swf?doc=introlinuxforbioinformatics-110613021514-phpapp01&amp;stripped_title=introduction-to-linux-for-bioinformatics&amp;userName=alabarga" /><param name="name" value="__sse8289632" /><param name="allowfullscreen" value="true" /><embed id="__sse8289632" type="application/x-shockwave-flash" width="425" height="355" src="http://static.slidesharecdn.com/swf/ssplayer2.swf?doc=introlinuxforbioinformatics-110613021514-phpapp01&amp;stripped_title=introduction-to-linux-for-bioinformatics&amp;userName=alabarga" name="__sse8289632" allowscriptaccess="always" allowfullscreen="true"></embed></object></p>
<div style="padding: 5px 0 12px;">View more <a href="http://www.slideshare.net/" target="_blank">presentations</a> from <a href="http://www.slideshare.net/alabarga" target="_blank">Alberto Labarga</a></div>
</div>
<div><strong>Bibliografía</strong></div>
<div>
<div id="_mcePaste">Linux for dummies <a href="http://ow.ly/d/nb3 ">http://ow.ly/d/nb3 </a></div>
<div id="_mcePaste">Bioinformatics Programming Using Python <a href="http://ow.ly/d/nb4">http://ow.ly/d/nb4</a></div>
<div id="_mcePaste">Python course in Bioinformatic <a href="http://ow.ly/d/nb5">http://ow.ly/d/nb5</a></div>
<div id="_mcePaste">Beginning Perl for bioinformatics <a href="http://ow.ly/73Nvc">http://ow.ly/73Nvc</a></div>
<div>Mastering Perl for bioinformatics <a href="http://ow.ly/73NBH">http://ow.ly/73NBH</a></div>
</div>
]]></content:encoded>
			<wfw:commentRss>http://www.scientifik.info/web/2011/10/transcriptomica-y-modelizacion-de-proteinas-empleando-supercomputacion/feed/</wfw:commentRss>
		<slash:comments>0</slash:comments>
		</item>
		<item>
		<title>Alineamiento y secuenciación de genomas empleando supercomputación</title>
		<link>http://www.scientifik.info/web/2011/10/alineamiento-y-secuenciacion-de-genomas-empleando-supercomputacion/</link>
		<comments>http://www.scientifik.info/web/2011/10/alineamiento-y-secuenciacion-de-genomas-empleando-supercomputacion/#comments</comments>
		<pubDate>Wed, 19 Oct 2011 06:44:37 +0000</pubDate>
		<dc:creator>admin</dc:creator>
				<category><![CDATA[ngs]]></category>

		<guid isPermaLink="false">http://www.scientifik.info/web/?p=124</guid>
		<description><![CDATA[ Introduction to linux for bioinformatics 
 View more presentations from Alberto Labarga 

]]></description>
			<content:encoded><![CDATA[<div style="width:425px" id="__ss_8289632"> <strong style="display:block;margin:12px 0 4px"><a href="http://www.slideshare.net/alabarga/introduction-to-linux-for-bioinformatics" title="Introduction to linux for bioinformatics" target="_blank">Introduction to linux for bioinformatics</a></strong> <iframe src="http://www.slideshare.net/slideshow/embed_code/8289632" width="425" height="355" frameborder="0" marginwidth="0" marginheight="0" scrolling="no"></iframe>
<div style="padding:5px 0 12px"> View more <a href="http://www.slideshare.net/" target="_blank">presentations</a> from <a href="http://www.slideshare.net/alabarga" target="_blank">Alberto Labarga</a> </div>
</p></div>
]]></content:encoded>
			<wfw:commentRss>http://www.scientifik.info/web/2011/10/alineamiento-y-secuenciacion-de-genomas-empleando-supercomputacion/feed/</wfw:commentRss>
		<slash:comments>0</slash:comments>
		</item>
		<item>
		<title>Bayesian statistics</title>
		<link>http://www.scientifik.info/web/2011/03/bayesian-statistics/</link>
		<comments>http://www.scientifik.info/web/2011/03/bayesian-statistics/#comments</comments>
		<pubDate>Wed, 16 Mar 2011 22:40:49 +0000</pubDate>
		<dc:creator>admin</dc:creator>
				<category><![CDATA[data analysis]]></category>
		<category><![CDATA[mgec]]></category>

		<guid isPermaLink="false">http://www.scientifik.info/web/?p=121</guid>
		<description><![CDATA[ Bayesian statistics 
 View more presentations from Alberto Labarga 

]]></description>
			<content:encoded><![CDATA[<div style="width:425px" id="__ss_7287707"> <strong style="display:block;margin:12px 0 4px"><a href="http://www.slideshare.net/alabarga/bayesian-statistics" title="Bayesian statistics">Bayesian statistics</a></strong> <object id="__sse7287707" width="425" height="355"><param name="movie" value="http://static.slidesharecdn.com/swf/ssplayer2.swf?doc=bayesianstatistics-110316173346-phpapp01&#038;stripped_title=bayesian-statistics&#038;userName=alabarga" /><param name="allowFullScreen" value="true"/><param name="allowScriptAccess" value="always"/><embed name="__sse7287707" src="http://static.slidesharecdn.com/swf/ssplayer2.swf?doc=bayesianstatistics-110316173346-phpapp01&#038;stripped_title=bayesian-statistics&#038;userName=alabarga" type="application/x-shockwave-flash" allowscriptaccess="always" allowfullscreen="true" width="425" height="355"></embed></object>
<div style="padding:5px 0 12px"> View more <a href="http://www.slideshare.net/">presentations</a> from <a href="http://www.slideshare.net/alabarga">Alberto Labarga</a> </div>
</p></div>
]]></content:encoded>
			<wfw:commentRss>http://www.scientifik.info/web/2011/03/bayesian-statistics/feed/</wfw:commentRss>
		<slash:comments>0</slash:comments>
		</item>
		<item>
		<title>Advanced Quantitative Data Analysis exercises</title>
		<link>http://www.scientifik.info/web/2011/03/advanced-quantitative-data-analysis-exercises/</link>
		<comments>http://www.scientifik.info/web/2011/03/advanced-quantitative-data-analysis-exercises/#comments</comments>
		<pubDate>Wed, 16 Mar 2011 11:32:44 +0000</pubDate>
		<dc:creator>admin</dc:creator>
				<category><![CDATA[data analysis]]></category>
		<category><![CDATA[mgec]]></category>
		<category><![CDATA[visualization]]></category>

		<guid isPermaLink="false">http://www.scientifik.info/web/?p=108</guid>
		<description><![CDATA[1 . Mapping with R
Following the first session about mapping with R I would like to propose you two exercises:
1) Plot a map of the world that presents information on the number of earthquakes around the world (by country)

Hint: The Significant Earthquake Database contains information on destructive earthquakes from 2150 B.C. to the present
2) Plot a map of Spain that shows any socio-economic variable by province (eg. population)

Hint:  You can find Spanish map files and data at Instituto Nacional de Estadística.
2. Data mining
After reading Development of Arab Water Sustainability Index ...]]></description>
			<content:encoded><![CDATA[<p><strong>1 . Mapping with R</strong></p>
<p>Following the first session about mapping with R I would like to propose you two exercises:</p>
<p>1) Plot a map of the world that presents information on the number of earthquakes around the world (by country)</p>
<p><img class="alignnone" title="Earthquakes around the world" src="http://www.scientifik.info/downloads/earthquakes.png" alt="Earthquakes around the world" width="599" height="350" /></p>
<p>Hint: The<a href="http://www.ngdc.noaa.gov/nndc/struts/form?t=101650&amp;s=1&amp;d=1" target="_blank"> Significant Earthquake Database</a> contains information on destructive earthquakes from 2150 B.C. to the present</p>
<p>2) Plot a map of Spain that shows any socio-economic variable by province (eg. population)</p>
<p><img class="alignnone" title="Spain population" src="http://www.scientifik.info/downloads/population.png" alt="Spain population" width="499" height="394" /></p>
<p>Hint:  You can find Spanish map files and data at <a href="http://www.ine.es" target="_blank">Instituto Nacional de Estadística</a>.</p>
<p><strong>2. Data mining</strong></p>
<p>After reading <a href="../../downloads/Development%20of%20Arab%20Water%20Sustainability%20Index%20Using%20Principal%20Component%20Analysis.pdf">Development of Arab Water Sustainability Index Using Principal Component Analysis</a> and based on what we have seen in class about<a href="http://www.scientifik.info/web/2011/03/principal-component-analysis/"> Principal Component Analysis</a> and <a href="http://www.scientifik.info/web/2011/03/principal-component-analysis/">Clustering</a>, try to analyse relevant <a href="http://www.fao.org/nr/water/aquastat/main/index.stm" target="_blank">water resources data</a> for Middle East countries. You can find this data from the <a href="http://www.fao.org/nr/water/aquastat/main/index.stm">FAO&#8217;s Information System on Water and Agriculture.</a></p>
<p><strong>3. Meta-analysis</strong></p>
<p>Nonulcer dyspepsia is characterized by a variety of upper abdominal symptoms in<br />
the absence of an organic disease. Due to the high frequency of these symptoms an<br />
empirical probative therapy of nonulcer dyspepsiawithout prior diagnostic procedures<br />
has been recommended for the management of these patients. For this empirical<br />
therapy either acid blocking substances such as histamine H2-receptor antagonists or<br />
gastroprokinetics such as cisapride or domperidone have been suggested.<br />
A major problem in treatment studies of nonulcer dyspepsia is the relatively high<br />
and variable rate of placebo responders. The reason for this variability is unclear, but<br />
based on this placebo response rate, it becomes difficult to draw valid conclusions on<br />
the treatment recommendations. This highly variable response rate can be overcome<br />
if available clinical studies are put together and evaluated with appropriate statistical<br />
methods in a meta-analysis. Only those placebo-controlled studies were included<br />
which used similar criteria for &#8220;treatment success&#8221; andwhich documented their results<br />
sufficiently for a possible reanalysis.</p>
<p>The data reported here are the number of successes and the number of patients in the treatment group aswell as in the control group.</p>
<p><img alt="Cisapride metanalysis" src="http://www.scientifik.info/downloads/cisapride.png" title="Cisapride metanalysis" class="alignnone" width="678" height="413" /></p>
<p><em>Hartung, J.andKnapp, G. (2001b)Arefinedmethod for themeta-analysis of controlled clinical<br />
trials with binary outcome. Statistics in Medicine, 20, 3875–3889. (7, 8, 9, 18)</em></p>
]]></content:encoded>
			<wfw:commentRss>http://www.scientifik.info/web/2011/03/advanced-quantitative-data-analysis-exercises/feed/</wfw:commentRss>
		<slash:comments>0</slash:comments>
		</item>
		<item>
		<title>Nuclear energy: an analysis</title>
		<link>http://www.scientifik.info/web/2011/03/nuclear-energy-an-analysis/</link>
		<comments>http://www.scientifik.info/web/2011/03/nuclear-energy-an-analysis/#comments</comments>
		<pubDate>Wed, 16 Mar 2011 11:00:04 +0000</pubDate>
		<dc:creator>admin</dc:creator>
				<category><![CDATA[data analysis]]></category>
		<category><![CDATA[mgec]]></category>
		<category><![CDATA[visualization]]></category>

		<guid isPermaLink="false">http://www.scientifik.info/web/?p=105</guid>
		<description><![CDATA[The final project for the Advanced Quantitative Data Analysis course consists in a multidimensional analysis of nuclear energy around the world. Some question you may try to ask are:

is it safe?
is it clean?
is it cheap?
is it fair?

You may find inspiration for a discussed analysis in the Statistical Analysis and Visualization of the Drug War in Mexico by Diego Valle.
Some useful links:
Nuclear power plant accidents: listed and ranked since 1952
Nuclear energy data
The Nuclear Energy Agency&#8217;s annual brown book
]]></description>
			<content:encoded><![CDATA[<p>The final project for the Advanced Quantitative Data Analysis course consists in a multidimensional analysis of nuclear energy around the world. Some question you may try to ask are:</p>
<ul>
<li>is it safe?</li>
<li>is it clean?</li>
<li>is it cheap?</li>
<li>is it fair?</li>
</ul>
<p>You may find inspiration for a discussed analysis in the <a href="http://www.r-bloggers.com/statistical-analysis-and-visualization-of-the-drug-war-in-mexico/" target="_blank">Statistical Analysis and Visualization of the Drug War in Mexico</a> by Diego Valle.</p>
<p><strong>Some useful links:</strong></p>
<p><a href="http://www.guardian.co.uk/news/datablog/2011/mar/14/nuclear-power-plant-accidents-list-rank" target="_blank">Nuclear power plant accidents: listed and ranked since 1952</a></p>
<p><a href="http://www.oecd-nea.org/ndd/nuclear-energy-data.html">Nuclear energy data</a></p>
<p><a href="http://www.oecd-ilibrary.org/content/serial/19962932" target="_blank">The Nuclear Energy Agency&#8217;s annual brown book</a></p>
]]></content:encoded>
			<wfw:commentRss>http://www.scientifik.info/web/2011/03/nuclear-energy-an-analysis/feed/</wfw:commentRss>
		<slash:comments>0</slash:comments>
		</item>
	</channel>
</rss>

